FastQCFastQC Report
Wed 8 May 2024
EGAF00007960777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468145
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21860.46694934261820586No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21350.4560552820173237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14420.3080242232641596No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTATT12840.2742739963045638No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9990.21339542235845732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9160.1956658727531No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9090.19417060953337106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7770.16597421738991125No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7540.16106120966794477No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6230.13307842655587476No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6000.1281654188339083No Hit
ATCGTCACCCCGCCTTCCGCACGCCCGCGTATT5370.11470804985634793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5140.10979504213438143No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5070.1082997789146525No Hit
ATCGTCACCCCGCCGTCTGCACGTCCGCGCATT4990.10659090666353373No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT4810.10274594409851649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)