FastQCFastQC Report
Wed 8 May 2024
EGAF00007960778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450063
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAAT13080.2906259790296025No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7940.17641974568004923No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6020.1337590515105663No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5840.1297596114321773No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC5800.12887084697031306No Hit
CTGGGACAGCGGCAGGCCACCGGTGTACGTTTCACCTTCGA5750.12775989139298277No Hit
TCACTGAGACAGCGGCAGGCCGCCAGTGTACGTTTCACCTT5440.120871966813535No Hit
CTGAACCAGCGGAGCACCGCCGTTGTATGCCTCGCCTTCGA4930.10954021992476608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)