FastQCFastQC Report
Wed 8 May 2024
EGAF00007960779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450063
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCTCGCCACGAGAACACCTCTCAGGTTCCG13130.2917369346069328No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11370.25263129828490677No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8530.1895290214925466No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG6230.1384250649353535No Hit
TCCACCGCACACCAGCCGATCCGCAAAGAAGAC6090.1353143893188287No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6000.1333146692796342No Hit
ACCGCCCACCAGCCGATCCGCAAAGAGGACTTC5590.12420483354552586No Hit
AGCACTGCCCACCAGCCGATTCGTAAAGAAGAC5310.11798348231247627No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5270.11709471785061204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)