FastQCFastQC Report
Wed 8 May 2024
EGAF00007960780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436341
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAAT11780.26997233814837474No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7700.17646748758425176No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6220.14254906139922677No Hit
TCACTGAGACAGCGGCAGGCCGCCAGTGTACGTTTCACCTT5640.1292567051915818No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC5580.12788163385975648No Hit
CTGGGACAGCGGCAGGCCACCGGTGTACGTTTCACCTTCGA5420.1242147769748889No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4990.1143600990968073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)