FastQCFastQC Report
Wed 8 May 2024
EGAF00007960781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436341
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20600.47210782392669953No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTCCG11720.26859726681654944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10670.24453351850960603No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8100.1856346297964207No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6100.13979891873557607No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG6070.13911138306966342No Hit
TCCACCGCACACCAGCCGATCCGCAAAGAAGAC5780.13246520496584094No Hit
ACCGCCCACCAGCCGATCCGCAAAGAGGACTTC5560.12742327674914802No Hit
AGCACTGCCCACCAGCCGATTCGTAAAGAAGAC4370.10015102866794548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)