FastQCFastQC Report
Wed 8 May 2024
EGAF00007960782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451512
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAAT12940.2865926044047556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7870.17430323003596804No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5870.13000761884512482No Hit
TCACTGAGACAGCGGCAGGCCGCCAGTGTACGTTTCACCTT5530.12247736494268148No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC5530.12247736494268148No Hit
CTGGGACAGCGGCAGGCCACCGGTGTACGTTTCACCTTCGA5470.12114849660695619No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4990.11051754992115381No Hit
CTGAACCAGCGGAGCACCGCCGTTGTATGCCTCGCCTTCGA4650.10298729601871046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)