FastQCFastQC Report
Wed 8 May 2024
EGAF00007960783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451512
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCTCGCCACGAGAACACCTCTCAGGTTCCG12890.2854852141249845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11400.2524849837878063No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8370.18537713283367885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6010.13310831162848386No Hit
TCCACCGCACACCAGCCGATCCGCAAAGAAGAC5860.1297861407891706No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG5770.12779283828558266No Hit
ACCGCCCACCAGCCGATCCGCAAAGAGGACTTC5540.12269884299863569No Hit
AGCACTGCCCACCAGCCGATTCGTAAAGAAGAC5240.1160545013200092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4960.10985311575329117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)