FastQCFastQC Report
Wed 8 May 2024
EGAF00007960784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439950
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAAT12080.27457665643823165No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7610.17297420161381977No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5810.13206046141607No Hit
CTGGGACAGCGGCAGGCCACCGGTGTACGTTTCACCTTCGA5730.13024207296283669No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC5600.12728719172633254No Hit
TCACTGAGACAGCGGCAGGCCGCCAGTGTACGTTTCACCTT5450.12387771337652007No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5270.1197863393567451No Hit
CTGAACCAGCGGAGCACCGCCGTTGTATGCCTCGCCTTCGA4610.10478463461757019No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4490.1020570519377202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)