FastQCFastQC Report
Wed 8 May 2024
EGAF00007960785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439950
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20340.46232526423457215No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTCCG11870.26980338674849413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11710.2661666098420275No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8050.18297533810660302No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG6090.13842482100238665No Hit
TCCACCGCACACCAGCCGATCCGCAAAGAAGAC6040.13728832821911582No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5570.12660529605637003No Hit
ACCGCCCACCAGCCGATCCGCAAAGAGGACTTC5340.12137742925332423No Hit
AGCACTGCCCACCAGCCGATTCGTAAAGAAGAC5100.11592226389362428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)