FastQCFastQC Report
Wed 8 May 2024
EGAF00007960786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498829
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9420.18884226859304493No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8300.16638968464143022No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7610.15255728917123904No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7570.1517554111729671No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6150.12328874223431277No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5930.11887841324381702No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5680.11386667575461731No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5100.102239444779674No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5020.10063568878313008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)