FastQCFastQC Report
Wed 8 May 2024
EGAF00007960787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498829
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10580.21209673054293157No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG9280.18603569559909308No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8740.1752103426224217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8260.16558780664315828No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8040.16117747765266255No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7390.1481469601807433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6620.1327108087140082No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6280.1258948457286966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6080.12188545573733685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5740.11506949275202526No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5380.10785259076757767No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5000.10023474978399412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)