FastQCFastQC Report
Wed 8 May 2024
EGAF00007960788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482763
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8400.17399842158574702No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7970.16509135952838142No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7130.1476915173698067No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6820.14127014704938035No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6020.12469886880311873No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5800.12014176728539676No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5500.11392753794304865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)