FastQCFastQC Report
Wed 8 May 2024
EGAF00007960789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482763
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23220.4809813510977436No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10210.211490938617914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8620.178555523103469No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8460.17524126745421664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8370.17337699865151224No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7150.14810579932596327No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6970.1443772617205544No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6500.1346416357508757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5930.1228346000004143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5770.11952034435116195No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4920.10191336121450897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)