FastQCFastQC Report
Wed 8 May 2024
EGAF00007960790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500169
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8880.17753999148287877No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8650.17294154575753395No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7800.15594728981604217No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7240.14475107413694172No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6070.1213589806645354No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5830.11656060251634948No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5730.11456127828793868No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5340.10676391379713657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)