FastQCFastQC Report
Wed 8 May 2024
EGAF00007960791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500169
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11120.22232485419928064No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8970.1793393832884485No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8890.17773992390571988No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8320.16634377580377832No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7710.15414789801047246No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7680.15354810074194924No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6360.12715702092692668No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6220.1243579670071516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5920.1183599943219192No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.11436134586509761No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5380.10756364348850089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)