FastQCFastQC Report
Wed 8 May 2024
EGAF00007960792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487249
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8820.18101627709856766No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8030.1648028010319159No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7790.15987718804964196No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6870.14099567161759183No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6460.13258108277287384No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5980.12272985680832592No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5540.11369956634082368No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5070.10405357425053721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)