FastQCFastQC Report
Wed 8 May 2024
EGAF00007960793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487249
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23260.47737399153205035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10260.21056995499221137No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8870.18204244646987475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8710.17875870448169212No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8560.17568019636777088No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7510.15413063957032236No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7460.1531044701990153No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6850.140585203869069No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6000.12314032455684874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5890.1208827519399732No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5140.1054902113703671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)