FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481539
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12410.25771536677195406No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11480.23840228932651356No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11300.23466427433707343No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9130.1896004269643788No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9070.18835442196789876No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7720.16031930954709797No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7520.15616595955883117No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6690.138929557107524No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6670.13851422210869732No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6240.12958451963392373No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6020.12501583464683028No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5740.11920114466325678No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5660.11753980466795005No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5590.11608613217205668No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5290.1098561071896565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)