FastQCFastQC Report
Wed 8 May 2024
EGAF00007960795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481539
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16450.3416130365349432No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14590.30298688164406207No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12900.26789107424320774No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12680.2633223892561143No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11510.23902529182475354No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9950.20662916191627265No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9630.19998380193504578No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7620.15824263455296456No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6540.13581454461632392No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6360.1320765296268838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6030.1252235021462436No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5950.12356216215093688No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5860.12169315465621684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5610.11650146717088336No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5460.11338645467968327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5330.11068677718730985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5040.104664419704323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)