FastQCFastQC Report
Wed 8 May 2024
EGAF00007960796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463559
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11270.24311899887608698No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11110.2396674425477663No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10760.23211716307956481No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7970.1719306496044732No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7640.16481181467731185No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7420.16006592472587095No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6790.1464754216831083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6410.13827797540334671No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6220.13417925226346591No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6160.13288491864034566No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6070.1309434182056653No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5660.1220988051143436No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5350.1154114147282223No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5200.11217558067042167No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5030.10850830207158096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)