FastQCFastQC Report
Wed 8 May 2024
EGAF00007960797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463559
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.47847199601345247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15620.33695818655230514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14350.3095614581962598No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12030.25951389143561016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11440.24678627747492768No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10460.22564549496396358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8630.18616831945879597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8440.18206959631891517No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7560.1630860365131515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6420.13849369767386677No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6220.13417925226346591No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5860.12641325052474442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5750.12404030554902397No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5590.12058874922070331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5230.11282274748198179No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA4840.10440957893170018No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4820.10397813439066009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)