FastQCFastQC Report
Wed 8 May 2024
EGAF00007960798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480725
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12450.2589838265120391No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11790.24525456341983462No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11720.2437984294555099No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9120.18971345363773467No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8590.17868843933641895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8120.1689115398616673No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7730.160798793489001No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6900.14353320505486505No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6230.1295959228248999No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6230.1295959228248999No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6000.12481148265640438No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5880.12231525300327631No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5480.11399448749284935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5280.10983410473763586No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5030.10463362629361901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)