FastQCFastQC Report
Wed 8 May 2024
EGAF00007960799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480725
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17800.3702740652139997No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14830.3084923812990795No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12840.2670965728847054No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12390.25773571168547504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11570.2406781423890998No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9540.198450257423683No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9530.19824223828592233No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8010.16662332934629986No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6460.1343803629933954No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6180.1285558271360965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6030.1254355400696864No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5960.1239794061053617No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5840.12148317645223361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5340.11108221956419992No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5200.10816995163555047No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA4970.10338551146705498No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4870.10130532008944823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)