FastQCFastQC Report
Wed 8 May 2024
EGAF00007960800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469464
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11650.248155343114701No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11640.24794233423649095No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10640.2266414464154866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9150.19490312356219006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8140.17338922686297567No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8000.17040710256803504No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7990.170194093689825No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6430.13696470868905816No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6300.1341955932723276No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5960.1269532914131861No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5920.12610125590034593No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5770.12290612272719525No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5600.11928497179762453No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5490.11694187413731404No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5320.1133207232077433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)