FastQCFastQC Report
Wed 8 May 2024
EGAF00007960801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469464
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21940.46734147879283605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17690.37681270555356744No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15290.325690574783157No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12330.262639946832984No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11840.25220251180069186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10560.22493737538980624No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9450.20129338990849138No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9150.19490312356219006No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8240.17551931564507608No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6640.1414378951314691No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6200.13206550449022716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5750.12248010497077517No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5660.1205630250668848No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5450.11608983862447388No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5410.11523780311163369No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5000.10650443910502189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)