FastQCFastQC Report
Wed 8 May 2024
EGAF00007960802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466895
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC23760.5088938626457769No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC23570.5048244251919597No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23510.5035393396802279No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20670.44271195879159125No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT18800.4026601270092848No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG17280.37010462737874683No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG15090.3231990062005376No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA13790.2953554867796828No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13400.28700243095342637No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11740.251448398462181No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT10890.2332430203793144No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10560.22617505006478972No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA9420.2017584253418863No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT9200.19704644513220318No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8330.17841270521209265No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAA6740.14435793915120101No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6680.14307285363946926No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6240.133648893220103No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6220.1332205313828591No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5700.12208312361451719No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5630.12058385718416346No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5160.11051735400893134No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC4670.10002248899645531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)