FastQCFastQC Report
Wed 8 May 2024
EGAF00007960803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466895
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG51841.1103138821362406No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT50891.0899666948671543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC27140.5812870131399994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT25020.5358806583921438No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17980.385097291682284No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC15220.3259833581426231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13300.2848606217672067No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11220.24031099069383907No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG10650.2281026783323874No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC10180.21803617515715523No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC9670.20711294830743526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8800.18847920838732476No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC7540.16149241264095782No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC7020.15035500487261588No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC7000.14992664303537198No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6860.14692811017466453No Hit
GACGCTAACGGCAACAACCTGACTTTCGAACAC6740.14435793915120101No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6170.13214962678974929No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6050.12957945576628577No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT5820.12465329463798071No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5150.11030317309030939No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC4850.10387774553165059No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGGAA4670.10002248899645531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)