FastQCFastQC Report
Wed 8 May 2024
EGAF00007960804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453126
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC23280.5137643834165331No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22680.5005230333284783No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC22550.4976540741427329No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20030.44204040377290205No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT17670.38995776009321914No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG16540.3650198840940489No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13460.2970476203087No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12940.28557178356571905No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA12670.2796131760260943No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11400.2515856516730446No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10460.2308408698684251No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT10040.2215719248067866No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA9150.2019305888428384No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT8450.18648234707344094No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7940.1752271994985942No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAA6700.14786174264994725No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6410.141461756774054No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6000.13241350088054976No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5850.12910316335853603No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5800.1279997175178648No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5250.11586181327048106No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5030.11100665157152756No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG4860.10725493571324533No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4560.10063426066921784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)