FastQCFastQC Report
Wed 8 May 2024
EGAF00007960805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453126
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG51711.1411836884222049No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT48631.073211424636856No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC26050.5748952829897203No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT23200.5119988700714592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21620.47712998150624775No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16730.3692129782885996No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13240.2921924586097465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12600.2780683518491545No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11080.24452359829274858No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG9970.22002710062984687No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC9950.2195857222935784No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC9000.19862025132082467No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8080.1783168478524737No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC7080.15624793103904874No Hit
GACGCTAACGGCAACAACCTGACTTTCGAACAC6720.14830312098621576No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6670.14719967514554452No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC6640.14653760764114176No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6640.14653760764114176No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6340.13991693259711427No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5580.1231445558189113No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT5380.11873077245622632No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4600.10151701734175482No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)