FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470314
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC25120.5341112533328797No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC23640.5026429151588088No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23560.5009419239061563No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20500.43587900849219885No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT18650.39654358577461013No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG18250.38803862951134777No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14630.3110687753288229No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13700.29129475201673777No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA12470.2651420115072058No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG12040.2559991835241987No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10620.22580658878961715No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT10600.22538134097645404No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA9300.19774023312085115No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT8500.18073032059432634No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8270.17583997074295046No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAA6750.14352113694255328No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6430.13671717193194333No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6380.13565405239903552No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6370.135441428492454No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC6320.13437830895954617No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5870.12481023316337596No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5290.11247804658164545No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5080.10801294454343267No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCG4830.10269734687889367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)