FastQCFastQC Report
Wed 8 May 2024
EGAF00007960807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470314
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG55121.171982973077561No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT51421.0933121276423836No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC25890.5504832941396599No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT24960.5307092708275747No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC18820.4001581921864967No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14870.3161717490867803No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13770.29278311936280865No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11330.2409028861569079No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG10620.22580658878961715No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC10080.2143248978342129No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC8880.18881002904442562No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8490.18051769668774478No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC7140.15181346929923412No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6910.14692311944785824No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6890.14649787163469513No Hit
GACGCTAACGGCAACAACCTGACTTTCGAACAC6800.14458425647546108No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6750.14352113694255328No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC6720.1428832652228086No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6590.14011915443724832No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT5580.11864413987251071No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5230.11120230314215608No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4940.10503620985129083No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4720.10035848390649652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)