FastQCFastQC Report
Wed 8 May 2024
EGAF00007960808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457838
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC23710.5178687658079932No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23110.5047636937082549No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC22850.49908482913170155No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20490.4475382122060642No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT18500.40407305640859864No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG16490.36017106487447526No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13900.3036008369772714No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA12300.2686539780446359No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12230.26712505296633304No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11280.2463753554750807No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10750.2347992084536452No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT10040.21929153980228813No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA8330.18194208431803388No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT8070.17626321974148063No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8030.17538954826816472No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAA6950.1518004184886357No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6340.1384769285205684No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5920.12930337805075157No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC5850.12777445297244877No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5790.12646394576247494No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5730.1251534385525011No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5220.1140141272677235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)