FastQCFastQC Report
Wed 8 May 2024
EGAF00007960809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457838
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG53331.1648224917984091No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT49311.0770185087301622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC24610.5375263739576007No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT24050.5252949733311782No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21720.4744036100105277No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16810.3671604366610024No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13910.3038192548456004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11720.25598574168155547No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11170.24397275892346199No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG10030.21907312193395917No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC9120.1991970959160227No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC8440.18434468086965258No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8270.18063157710806005No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC7200.15726086519686003No Hit
GACGCTAACGGCAACAACCTGACTTTCGAACAC6940.15158200062030674No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6710.14655838964874038No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6620.14459262883377963No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6590.1439373752287927No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6100.1332348996806731No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC5890.12864812444576465No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT5530.12078508118592167No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC4900.1070247554811964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)