FastQCFastQC Report
Wed 8 May 2024
EGAF00007960810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433917
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9670.22285367939029813No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8560.1972727503186093No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8470.19519862093441834No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7260.16731310365807284No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6210.143114927509178No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5980.1378143746384677No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5110.11776445725795487No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4610.10624151623467161No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4550.1048587633118776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)