FastQCFastQC Report
Wed 31 May 2023
EGAF00007960811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433917
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11860.2733241610722788No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9710.2237755146721608No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9230.21271349128980888No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8510.196120456216281No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7870.18137109170647842No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7680.1769923741176308No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7450.1716918212469205No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7440.17146136242645482No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4980.11476849259190122No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4920.11338573966910721No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4890.11269436320771023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4710.10854610443932827No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4660.10739381033699993No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4360.10048004572302997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)