FastQCFastQC Report
Wed 8 May 2024
EGAF00007960812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418472
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8510.2033588866160699No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7610.18185207134527517No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7610.18185207134527517No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7170.1713376283239978No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6250.1493528838249632No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6030.1440956623143245No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4690.11207440402225238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)