FastQCFastQC Report
Wed 8 May 2024
EGAF00007960813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418472
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20530.4905943527882391No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11230.2683572616566939No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8410.2009692404748705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8040.19212754975243265No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7600.18161310673115524No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7550.18041828366055557No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7480.17874553136171598No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7280.17396623907931713No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6620.15819457454740102No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5080.12139402397293009No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4420.10562235944101399No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4400.10514443021277409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)