FastQCFastQC Report
Wed 8 May 2024
EGAF00007960814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434925
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9550.21957808817612232No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8170.1878484796229235No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7860.1807208139334368No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7600.17474277174225442No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6760.1554290969707421No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5430.12484911191584756No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4700.1080646088406047No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4660.10714491004196126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)