FastQCFastQC Report
Wed 8 May 2024
EGAF00007960815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434925
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10940.251537621428982No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9600.22072771167442662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8700.20003448870494914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8290.19060757601885384No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7880.18118066333275853No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7780.1788814163361499No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7710.17727194343852387No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7470.1717537506466632No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.12140024142093464No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4800.11036385583721331No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4730.10875438293958728No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4590.10553543714433523No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4460.10254641604874404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)