FastQCFastQC Report
Wed 8 May 2024
EGAF00007960816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423227
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8840.20887136217679872No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8590.20296436664012457No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8200.19374945360291285No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6980.1649233153839429No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6400.1512190857388588No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5510.13019018162829876No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4440.1049082407313333No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4250.10041892412346093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)