FastQCFastQC Report
Wed 8 May 2024
EGAF00007960817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423227
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20430.48271967525701337No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10720.2532919686125885No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9230.21808627521401044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8730.2062722841406621No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7870.18595221949450294No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7760.18335314145836631No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7380.17437450824262157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7200.17012147145621617No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7110.16799495306301346No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4810.11365059412561107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4600.10868871787480477No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4550.10750731876746993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)