FastQCFastQC Report
Wed 8 May 2024
EGAF00007960826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502826
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11430.22731521440816504No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7770.15452661556880512No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7480.14875921292852795No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7080.14080417480400775No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6090.12111545544582022No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5260.10460875133744078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)