FastQCFastQC Report
Wed 8 May 2024
EGAF00007960827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502826
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17560.3492261736664373No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11760.23387812086089424No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11570.2300994777517471No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6870.13662777978863463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.11256378946196101No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5610.11156940969639596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5130.10202336394697172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)