FastQCFastQC Report
Wed 8 May 2024
EGAF00007960828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488584
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10700.21900021286001997No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7780.15923566878980894No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7140.1461365906374339No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6920.14163378252255499No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5420.110932818102926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)