FastQCFastQC Report
Wed 8 May 2024
EGAF00007960829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488584
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23860.4883500073682314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17400.35613118726769605No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11280.23087125243560985No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10660.21818152047549652No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6730.13774499369606863No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5030.10295056735382248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)