FastQCFastQC Report
Wed 8 May 2024
EGAF00007960831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507587
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19370.3816094580830478No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12580.24783928666415808No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12180.23995886419470946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7070.13928646714750378No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5840.11505416805394936No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5240.10323353434977649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)