FastQCFastQC Report
Wed 8 May 2024
EGAF00007960833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492550
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23820.4836057253070754No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19080.38737184042229217No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11940.24241193787432747No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11350.2304334585321287No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7140.14495990254796468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5120.10394883768145367No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5060.10273068723987414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)