FastQCFastQC Report
Wed 8 May 2024
EGAF00007960834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478155
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA18140.37937488889586013No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14420.3015758488356286No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14160.29613828151959093No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA13300.27815248193577397No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13030.27250577741527326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12510.2616306427831979No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG10160.21248339973439576No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10130.21185598812100678No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9060.1894783072434671No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG8990.18801434681222615No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8460.1769300749756878No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7460.15601635452938903No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAG6860.14346812226160974No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT6720.1405402013991279No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6460.1351026340830902No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6290.13154730160721942No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6250.13071075278936745No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6160.12882851794920058No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5920.12380922504208886No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5560.1162802856814213No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG5500.11502546245464337No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5060.10582342545827189No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5020.10498687664041995No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4960.10373205341364201No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4790.10017672093777122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)