FastQCFastQC Report
Wed 8 May 2024
EGAF00007960835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478155
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29410.6150725183256476No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG18140.37937488889586013No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14350.3001118884043877No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13250.27710679591345905No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG12740.2664407984858466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12250.2561930754671602No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11940.2497098221288076No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG9990.20892806725852495No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC9820.20537273478265414No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9430.19721638380859763No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8670.18132195626941056No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8470.17713921218015077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8160.17065595884179816No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8040.1681463123882423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7610.1591534125963338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7230.1512061988267403No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGCCG6860.14346812226160974No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6620.138448829354498No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA6140.1284102435402746No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5780.12088130417960703No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5690.11899906933944016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5690.11899906933944016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5180.10833307191182776No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5120.10707824868504982No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5090.10645083707166086No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC4820.10080413255116019No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT4800.10038585814223422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)