FastQCFastQC Report
Wed 8 May 2024
EGAF00007960836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463564
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15920.34342615043445995No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14180.30589088022365846No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13460.2903590442743612No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12640.2726700088876617No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA12530.27029708950651904No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11540.24894081507623542No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG9730.20989550525925224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9210.1986780681847598No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG9090.19608942885987693No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8470.18271479234798216No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG8320.17947899319187857No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7520.1622213976926595No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAG6450.13913936371245395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6280.1354721246688699No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6270.13525640472512965No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6050.13051056596284438No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5960.12856908646918225No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5920.12770620669422128No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5890.12705904686300057No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5750.12403896765063724No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5130.11066433113874244No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG4940.1065656522076779No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG4820.10397701288279504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4700.10138837355791218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)